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Cluster: HRGMv2_2037_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2037_8 HRGMv2_2037_8_46 40968 41708 + 3.A.2.1.2
TC HRGMv2_2037_8 HRGMv2_2037_8_47 41752 42018 + 3.A.2.1.5
pfam HRGMv2_2037_8 HRGMv2_2037_8_48 42057 42572 + ATP-synt_B
pfam HRGMv2_2037_8 HRGMv2_2037_8_49 42560 43108 + OSCP
TC HRGMv2_2037_8 HRGMv2_2037_8_50 43149 44648 + 3.A.2.1.5
TC HRGMv2_2037_8 HRGMv2_2037_8_51 44690 45565 + 3.A.2.1.5
TC HRGMv2_2037_8 HRGMv2_2037_8_52 45578 46972 + 3.A.2.1.5
TC HRGMv2_2037_8 HRGMv2_2037_8_53 46989 47405 + 3.A.2.1.5
TF HRGMv2_2037_8 HRGMv2_2037_8_54 47540 48565 + LacI
CAZyme HRGMv2_2037_8 HRGMv2_2037_8_55 48833 50323 + GH51_1
CAZyme HRGMv2_2037_8 HRGMv2_2037_8_56 50440 51972 + GH39
Gene ID: HRGMv2_2037_8_46
Type: TC
Location: 40968 - 41708 (+)
Gene ID: HRGMv2_2037_8_47
Type: TC
Location: 41752 - 42018 (+)
Gene ID: HRGMv2_2037_8_48
Type: pfam
Location: 42057 - 42572 (+)
Gene ID: HRGMv2_2037_8_49
Type: pfam
Location: 42560 - 43108 (+)
Gene ID: HRGMv2_2037_8_50
Type: TC
Location: 43149 - 44648 (+)
Gene ID: HRGMv2_2037_8_51
Type: TC
Location: 44690 - 45565 (+)
Gene ID: HRGMv2_2037_8_52
Type: TC
Location: 45578 - 46972 (+)
Gene ID: HRGMv2_2037_8_53
Type: TC
Location: 46989 - 47405 (+)
Gene ID: HRGMv2_2037_8_54
Type: TF
Location: 47540 - 48565 (+)
Gene ID: HRGMv2_2037_8_55
Type: CAZyme
Location: 48833 - 50323 (+)
Gene ID: HRGMv2_2037_8_56
Type: CAZyme
Location: 50440 - 51972 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2037_8_47 vegan > omnivore 1.53740 0.01057
HRGMv2_2037_8_56 vegan > omnivore 1.00404 0.01057

🧭 Explore Read Mapping of CGC

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