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Cluster: HRGMv2_2037_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2037_8 HRGMv2_2037_8_35 28930 29778 + CE4
TF HRGMv2_2037_8 HRGMv2_2037_8_36 29998 31614 + HTH_AraC | HTH_AraC
TC HRGMv2_2037_8 HRGMv2_2037_8_37 31611 33431 + 8.A.59.2.1
STP HRGMv2_2037_8 HRGMv2_2037_8_38 33412 34389 + Peripla_BP_1
TC HRGMv2_2037_8 HRGMv2_2037_8_39 34602 35573 + 3.A.1.2.11
TC HRGMv2_2037_8 HRGMv2_2037_8_40 35595 37091 + 3.A.1.2.13
TC HRGMv2_2037_8 HRGMv2_2037_8_41 37106 38107 + 3.A.1.2.11
Gene ID: HRGMv2_2037_8_35
Type: CAZyme
Location: 28930 - 29778 (+)
Gene ID: HRGMv2_2037_8_36
Type: TF
Location: 29998 - 31614 (+)
Gene ID: HRGMv2_2037_8_37
Type: TC
Location: 31611 - 33431 (+)
Gene ID: HRGMv2_2037_8_38
Type: STP
Location: 33412 - 34389 (+)
Gene ID: HRGMv2_2037_8_39
Type: TC
Location: 34602 - 35573 (+)
Gene ID: HRGMv2_2037_8_40
Type: TC
Location: 35595 - 37091 (+)
Gene ID: HRGMv2_2037_8_41
Type: TC
Location: 37106 - 38107 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2037_8_40 vegan > omnivore 1.18739 0.01057

🧭 Explore Read Mapping of CGC

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