Cluster: HRGMv2_2037_CGC23
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2037
- CGC Family ID: CGCFAM_00047
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2037_7 | HRGMv2_2037_7_65 | 74476 | 75339 | - | 3.A.1.1.3 |
| TC | HRGMv2_2037_7 | HRGMv2_2037_7_66 | 75342 | 76298 | - | 3.A.1.1.4 |
| NULL(UNKNOWN) | HRGMv2_2037_7 | HRGMv2_2037_7_67 | 76372 | 77715 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_2037_7 | HRGMv2_2037_7_68 | 77781 | 78788 | - | LacI |
| CAZyme | HRGMv2_2037_7 | HRGMv2_2037_7_69 | 79188 | 81623 | + | GH94 |
Gene ID: HRGMv2_2037_7_65
Type: TC
Location: 74476 - 75339 (-)
Type: TC
Location: 74476 - 75339 (-)
Gene ID: HRGMv2_2037_7_66
Type: TC
Location: 75342 - 76298 (-)
Type: TC
Location: 75342 - 76298 (-)
Gene ID: HRGMv2_2037_7_67
Type:
Location: 76372 - 77715 (-)
Type:
Location: 76372 - 77715 (-)
Gene ID: HRGMv2_2037_7_68
Type: TF
Location: 77781 - 78788 (-)
Type: TF
Location: 77781 - 78788 (-)
Gene ID: HRGMv2_2037_7_69
Type: CAZyme
Location: 79188 - 81623 (+)
Type: CAZyme
Location: 79188 - 81623 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens sp905214955
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2037_7_65 | vegan > omnivore | 1.54855 | 0.01057 |