Cluster: HRGMv2_2037_CGC15
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_2037
- CGC Family ID: CGCFAM_03479
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2037_5 | HRGMv2_2037_5_43 | 45023 | 45964 | + | 3.A.1.1.29 |
| TC | HRGMv2_2037_5 | HRGMv2_2037_5_44 | 45992 | 46876 | + | 3.A.1.1.29 |
| CAZyme | HRGMv2_2037_5 | HRGMv2_2037_5_45 | 46901 | 49129 | + | GH95 |
| NULL(UNKNOWN) | HRGMv2_2037_5 | HRGMv2_2037_5_46 | 49326 | 50438 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_2037_5 | HRGMv2_2037_5_47 | 50499 | 52058 | - | HTH_AraC |
| TC | HRGMv2_2037_5 | HRGMv2_2037_5_48 | 52250 | 53197 | + | 3.A.1.1.10 |
| TC | HRGMv2_2037_5 | HRGMv2_2037_5_49 | 53214 | 54098 | + | 3.A.1.1.10 |
| NULL(UNKNOWN) | HRGMv2_2037_5 | HRGMv2_2037_5_50 | 54203 | 55816 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2037_5 | HRGMv2_2037_5_51 | 55928 | 58927 | + | GH2 |
| CAZyme | HRGMv2_2037_5 | HRGMv2_2037_5_52 | 58946 | 60028 | + | CE15 |
| STP | HRGMv2_2037_5 | HRGMv2_2037_5_53 | 60056 | 61873 | - | dCache_1 |
| NULL(UNKNOWN) | HRGMv2_2037_5 | HRGMv2_2037_5_54 | 62176 | 63735 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2037_5 | HRGMv2_2037_5_55 | 63719 | 66010 | + | GH95 |
| CAZyme | HRGMv2_2037_5 | HRGMv2_2037_5_56 | 66029 | 67390 | + | GH29 |
| CAZyme | HRGMv2_2037_5 | HRGMv2_2037_5_57 | 67412 | 69451 | + | GH42 |
| CAZyme | HRGMv2_2037_5 | HRGMv2_2037_5_58 | 69467 | 71797 | + | GH31_4 |
| CAZyme | HRGMv2_2037_5 | HRGMv2_2037_5_59 | 71827 | 73143 | + | GH140 |
| TC | HRGMv2_2037_5 | HRGMv2_2037_5_60 | 73182 | 74516 | - | 2.A.66.1.22 |
| CAZyme | HRGMv2_2037_5 | HRGMv2_2037_5_61 | 74639 | 77347 | + | GH138 |
Gene ID: HRGMv2_2037_5_43
Type: TC
Location: 45023 - 45964 (+)
Type: TC
Location: 45023 - 45964 (+)
Gene ID: HRGMv2_2037_5_44
Type: TC
Location: 45992 - 46876 (+)
Type: TC
Location: 45992 - 46876 (+)
Gene ID: HRGMv2_2037_5_45
Type: CAZyme
Location: 46901 - 49129 (+)
Type: CAZyme
Location: 46901 - 49129 (+)
Gene ID: HRGMv2_2037_5_46
Type:
Location: 49326 - 50438 (+)
Type:
Location: 49326 - 50438 (+)
Gene ID: HRGMv2_2037_5_47
Type: TF
Location: 50499 - 52058 (-)
Type: TF
Location: 50499 - 52058 (-)
Gene ID: HRGMv2_2037_5_48
Type: TC
Location: 52250 - 53197 (+)
Type: TC
Location: 52250 - 53197 (+)
Gene ID: HRGMv2_2037_5_49
Type: TC
Location: 53214 - 54098 (+)
Type: TC
Location: 53214 - 54098 (+)
Gene ID: HRGMv2_2037_5_50
Type:
Location: 54203 - 55816 (+)
Type:
Location: 54203 - 55816 (+)
Gene ID: HRGMv2_2037_5_51
Type: CAZyme
Location: 55928 - 58927 (+)
Type: CAZyme
Location: 55928 - 58927 (+)
Gene ID: HRGMv2_2037_5_52
Type: CAZyme
Location: 58946 - 60028 (+)
Type: CAZyme
Location: 58946 - 60028 (+)
Gene ID: HRGMv2_2037_5_53
Type: STP
Location: 60056 - 61873 (-)
Type: STP
Location: 60056 - 61873 (-)
Gene ID: HRGMv2_2037_5_54
Type:
Location: 62176 - 63735 (+)
Type:
Location: 62176 - 63735 (+)
Gene ID: HRGMv2_2037_5_55
Type: CAZyme
Location: 63719 - 66010 (+)
Type: CAZyme
Location: 63719 - 66010 (+)
Gene ID: HRGMv2_2037_5_56
Type: CAZyme
Location: 66029 - 67390 (+)
Type: CAZyme
Location: 66029 - 67390 (+)
Gene ID: HRGMv2_2037_5_57
Type: CAZyme
Location: 67412 - 69451 (+)
Type: CAZyme
Location: 67412 - 69451 (+)
Gene ID: HRGMv2_2037_5_58
Type: CAZyme
Location: 69467 - 71797 (+)
Type: CAZyme
Location: 69467 - 71797 (+)
Gene ID: HRGMv2_2037_5_59
Type: CAZyme
Location: 71827 - 73143 (+)
Type: CAZyme
Location: 71827 - 73143 (+)
Gene ID: HRGMv2_2037_5_60
Type: TC
Location: 73182 - 74516 (-)
Type: TC
Location: 73182 - 74516 (-)
Gene ID: HRGMv2_2037_5_61
Type: CAZyme
Location: 74639 - 77347 (+)
Type: CAZyme
Location: 74639 - 77347 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Limivivens
Species
Limivivens sp905214955
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.