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Cluster: HRGMv2_2017_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2017_2 HRGMv2_2017_2_174 182947 184371 - 2.A.6.2.22
TF HRGMv2_2017_2 HRGMv2_2017_2_175 184477 184953 + MarR
TC HRGMv2_2017_2 HRGMv2_2017_2_176 184964 185962 + 8.A.1.1.2
TC HRGMv2_2017_2 HRGMv2_2017_2_177 185962 187512 + 2.A.1.3.2
NULL(UNKNOWN) HRGMv2_2017_2 HRGMv2_2017_2_178 187536 189131 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2017_2 HRGMv2_2017_2_179 189254 191170 - 4.C.1.1.14
pfam HRGMv2_2017_2 HRGMv2_2017_2_180 191291 191824 + DUF1836
peptidase HRGMv2_2017_2 HRGMv2_2017_2_181 192022 193227 + S11.UPW
CAZyme HRGMv2_2017_2 HRGMv2_2017_2_182 193213 194190 - GH3
Gene ID: HRGMv2_2017_2_174
Type: TC
Location: 182947 - 184371 (-)
Gene ID: HRGMv2_2017_2_175
Type: TF
Location: 184477 - 184953 (+)
Gene ID: HRGMv2_2017_2_176
Type: TC
Location: 184964 - 185962 (+)
Gene ID: HRGMv2_2017_2_177
Type: TC
Location: 185962 - 187512 (+)
Gene ID: HRGMv2_2017_2_178
Type:
Location: 187536 - 189131 (+)
Gene ID: HRGMv2_2017_2_179
Type: TC
Location: 189254 - 191170 (-)
Gene ID: HRGMv2_2017_2_180
Type: pfam
Location: 191291 - 191824 (+)
Gene ID: HRGMv2_2017_2_181
Type: peptidase
Location: 192022 - 193227 (+)
Gene ID: HRGMv2_2017_2_182
Type: CAZyme
Location: 193213 - 194190 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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