Cluster: HRGMv2_2008_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2008
- CGC Family ID: CGCFAM_00643
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2008_19 | HRGMv2_2008_19_2 | 1288 | 1962 | - | 3.A.1.140.1 |
| pfam | HRGMv2_2008_19 | HRGMv2_2008_19_3 | 1962 | 2906 | - | Transket_pyr | Transketolase_C | Transketolase_C_1 |
| pfam | HRGMv2_2008_19 | HRGMv2_2008_19_4 | 2918 | 3757 | - | Transketolase_N | E1_dh | TPP_enzyme_C | DXP_synthase_N |
| CAZyme | HRGMv2_2008_19 | HRGMv2_2008_19_5 | 3797 | 4522 | - | GT26 |
| TC | HRGMv2_2008_19 | HRGMv2_2008_19_6 | 4652 | 7297 | - | 4.A.2.1.17 |
Gene ID: HRGMv2_2008_19_2
Type: TC
Location: 1288 - 1962 (-)
Type: TC
Location: 1288 - 1962 (-)
Gene ID: HRGMv2_2008_19_3
Type: pfam
Location: 1962 - 2906 (-)
Type: pfam
Location: 1962 - 2906 (-)
Gene ID: HRGMv2_2008_19_4
Type: pfam
Location: 2918 - 3757 (-)
Type: pfam
Location: 2918 - 3757 (-)
Gene ID: HRGMv2_2008_19_5
Type: CAZyme
Location: 3797 - 4522 (-)
Type: CAZyme
Location: 3797 - 4522 (-)
Gene ID: HRGMv2_2008_19_6
Type: TC
Location: 4652 - 7297 (-)
Type: TC
Location: 4652 - 7297 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
Gastranaerophilaceae
Genus
RUG841
Species
RUG841 sp900772035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.