Cluster: HRGMv2_2008_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2008
- CGC Family ID: CGCFAM_02561
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2008_14 | HRGMv2_2008_14_6 | 2596 | 3852 | + | 9.B.174.1.2 |
| STP | HRGMv2_2008_14 | HRGMv2_2008_14_7 | 3948 | 5540 | + | T2SSE |
| pfam | HRGMv2_2008_14 | HRGMv2_2008_14_8 | 5599 | 6414 | + | LpxI_C | LpxI_N |
| CAZyme | HRGMv2_2008_14 | HRGMv2_2008_14_9 | 6411 | 7529 | + | GT19 |
| TC | HRGMv2_2008_14 | HRGMv2_2008_14_10 | 7687 | 9522 | + | 8.A.59.4.1 |
Gene ID: HRGMv2_2008_14_6
Type: TC
Location: 2596 - 3852 (+)
Type: TC
Location: 2596 - 3852 (+)
Gene ID: HRGMv2_2008_14_7
Type: STP
Location: 3948 - 5540 (+)
Type: STP
Location: 3948 - 5540 (+)
Gene ID: HRGMv2_2008_14_8
Type: pfam
Location: 5599 - 6414 (+)
Type: pfam
Location: 5599 - 6414 (+)
Gene ID: HRGMv2_2008_14_9
Type: CAZyme
Location: 6411 - 7529 (+)
Type: CAZyme
Location: 6411 - 7529 (+)
Gene ID: HRGMv2_2008_14_10
Type: TC
Location: 7687 - 9522 (+)
Type: TC
Location: 7687 - 9522 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
Gastranaerophilaceae
Genus
RUG841
Species
RUG841 sp900772035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.