Cluster: HRGMv2_1974_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1974
- CGC Family ID: CGCFAM_00340
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1974_16 | HRGMv2_1974_16_5 | 3850 | 5328 | - | 2.A.25.1.3 |
| NULL(UNKNOWN) | HRGMv2_1974_16 | HRGMv2_1974_16_6 | 6339 | 7661 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1974_16 | HRGMv2_1974_16_7 | 7753 | 8568 | + | LpxI_C | LpxI_N |
| CAZyme | HRGMv2_1974_16 | HRGMv2_1974_16_8 | 8576 | 9694 | + | GT19 |
Gene ID: HRGMv2_1974_16_5
Type: TC
Location: 3850 - 5328 (-)
Type: TC
Location: 3850 - 5328 (-)
Gene ID: HRGMv2_1974_16_6
Type:
Location: 6339 - 7661 (+)
Type:
Location: 6339 - 7661 (+)
Gene ID: HRGMv2_1974_16_7
Type: pfam
Location: 7753 - 8568 (+)
Type: pfam
Location: 7753 - 8568 (+)
Gene ID: HRGMv2_1974_16_8
Type: CAZyme
Location: 8576 - 9694 (+)
Type: CAZyme
Location: 8576 - 9694 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
Gastranaerophilaceae
Genus
CAG-196
Species
CAG-196 sp002102975
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1974_16_6 | vegetarian > omnivore | 18.27412 | 0.01332 |
| HRGMv2_1974_16_6 | vegetarian > vegan | 18.27412 | 0.01332 |
| HRGMv2_1974_16_7 | vegetarian > vegan | 1.44721 | 0.02398 |
| HRGMv2_1974_16_8 | vegetarian > vegan | 1.10588 | 0.02398 |