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Cluster: HRGMv2_1962_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1962_2 HRGMv2_1962_2_116 117711 118700 + 3.A.1.141.2
CAZyme HRGMv2_1962_2 HRGMv2_1962_2_117 118711 120213 - GH77
TF HRGMv2_1962_2 HRGMv2_1962_2_118 120210 121205 - LacI
TC HRGMv2_1962_2 HRGMv2_1962_2_119 121215 122282 - 3.A.1.1.46
TC HRGMv2_1962_2 HRGMv2_1962_2_120 122288 123184 - 3.A.1.1.26
TC HRGMv2_1962_2 HRGMv2_1962_2_121 123184 125202 - 3.A.1.1.2
NULL(UNKNOWN) HRGMv2_1962_2 HRGMv2_1962_2_122 125204 125605 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_1962_2 HRGMv2_1962_2_123 125661 127007 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1962_2 HRGMv2_1962_2_124 127056 128030 - 2.A.98.1.3
pfam HRGMv2_1962_2 HRGMv2_1962_2_125 128136 129263 - DnaJ | DnaJ_CXXCXGXG | DnaJ_C
TC HRGMv2_1962_2 HRGMv2_1962_2_126 129312 131129 - 1.A.33.1.4
Gene ID: HRGMv2_1962_2_116
Type: TC
Location: 117711 - 118700 (+)
Gene ID: HRGMv2_1962_2_117
Type: CAZyme
Location: 118711 - 120213 (-)
Gene ID: HRGMv2_1962_2_118
Type: TF
Location: 120210 - 121205 (-)
Gene ID: HRGMv2_1962_2_119
Type: TC
Location: 121215 - 122282 (-)
Gene ID: HRGMv2_1962_2_120
Type: TC
Location: 122288 - 123184 (-)
Gene ID: HRGMv2_1962_2_121
Type: TC
Location: 123184 - 125202 (-)
Gene ID: HRGMv2_1962_2_122
Type:
Location: 125204 - 125605 (-)
Gene ID: HRGMv2_1962_2_123
Type:
Location: 125661 - 127007 (-)
Gene ID: HRGMv2_1962_2_124
Type: TC
Location: 127056 - 128030 (-)
Gene ID: HRGMv2_1962_2_125
Type: pfam
Location: 128136 - 129263 (-)
Gene ID: HRGMv2_1962_2_126
Type: TC
Location: 129312 - 131129 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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