Cluster: HRGMv2_1953_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1953
- CGC Family ID: CGCFAM_00932
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1953_9 | HRGMv2_1953_9_28 | 28748 | 30220 | + | 3.A.1.2.6 |
| TC | HRGMv2_1953_9 | HRGMv2_1953_9_29 | 30217 | 31179 | + | 3.A.1.2.13 |
| pfam | HRGMv2_1953_9 | HRGMv2_1953_9_30 | 31206 | 32132 | + | AP_endonuc_2 |
| CAZyme | HRGMv2_1953_9 | HRGMv2_1953_9_31 | 32142 | 33179 | + | GH179 |
Gene ID: HRGMv2_1953_9_28
Type: TC
Location: 28748 - 30220 (+)
Type: TC
Location: 28748 - 30220 (+)
Gene ID: HRGMv2_1953_9_29
Type: TC
Location: 30217 - 31179 (+)
Type: TC
Location: 30217 - 31179 (+)
Gene ID: HRGMv2_1953_9_30
Type: pfam
Location: 31206 - 32132 (+)
Type: pfam
Location: 31206 - 32132 (+)
Gene ID: HRGMv2_1953_9_31
Type: CAZyme
Location: 32142 - 33179 (+)
Type: CAZyme
Location: 32142 - 33179 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Fusobacteriota
Class
Fusobacteriia
Order
Fusobacteriales
Family
Fusobacteriaceae
Genus
Fusobacterium_A
Species
Fusobacterium_A ulcerans_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.