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Cluster: HRGMv2_1953_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1953_8 HRGMv2_1953_8_2 339 1811 - GT83
pfam HRGMv2_1953_8 HRGMv2_1953_8_3 1861 2673 - Hydrolase | S6PP | Hydrolase_3
TC HRGMv2_1953_8 HRGMv2_1953_8_4 2721 4214 - 2.A.1.3.2
TC HRGMv2_1953_8 HRGMv2_1953_8_5 4226 5443 - 8.A.1.1.1
TC HRGMv2_1953_8 HRGMv2_1953_8_6 5458 6879 - 2.A.6.2.22
pfam HRGMv2_1953_8 HRGMv2_1953_8_7 7371 7736 + FadA
NULL(UNKNOWN) HRGMv2_1953_8 HRGMv2_1953_8_8 7755 7961 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1953_8 HRGMv2_1953_8_9 8051 9403 - 2.A.66.1.28
TC HRGMv2_1953_8 HRGMv2_1953_8_10 9723 10751 + 3.A.15.2.1
Gene ID: HRGMv2_1953_8_2
Type: CAZyme
Location: 339 - 1811 (-)
Gene ID: HRGMv2_1953_8_3
Type: pfam
Location: 1861 - 2673 (-)
Gene ID: HRGMv2_1953_8_4
Type: TC
Location: 2721 - 4214 (-)
Gene ID: HRGMv2_1953_8_5
Type: TC
Location: 4226 - 5443 (-)
Gene ID: HRGMv2_1953_8_6
Type: TC
Location: 5458 - 6879 (-)
Gene ID: HRGMv2_1953_8_7
Type: pfam
Location: 7371 - 7736 (+)
Gene ID: HRGMv2_1953_8_8
Type:
Location: 7755 - 7961 (+)
Gene ID: HRGMv2_1953_8_9
Type: TC
Location: 8051 - 9403 (-)
Gene ID: HRGMv2_1953_8_10
Type: TC
Location: 9723 - 10751 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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