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Cluster: HRGMv2_1953_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1953_6 HRGMv2_1953_6_1 523 1017 + 3.D.1.6.3
TC HRGMv2_1953_6 HRGMv2_1953_6_2 1055 2839 + 3.D.1.5.1
TC HRGMv2_1953_6 HRGMv2_1953_6_3 2866 4623 + 3.D.1.7.1
TF HRGMv2_1953_6 HRGMv2_1953_6_4 4708 5562 - HTH_6
TC HRGMv2_1953_6 HRGMv2_1953_6_5 5725 7068 + 2.A.66.1.33
STP HRGMv2_1953_6 HRGMv2_1953_6_6 7052 8167 + Fer4
pfam HRGMv2_1953_6 HRGMv2_1953_6_7 8364 9653 - NTP_transf_3 | YqeC
TC HRGMv2_1953_6 HRGMv2_1953_6_8 9958 10965 + 3.A.1.24.2
TC HRGMv2_1953_6 HRGMv2_1953_6_9 10955 11602 + 3.A.1.24.5
TC HRGMv2_1953_6 HRGMv2_1953_6_10 11634 12416 + 3.A.1.24.5
TC HRGMv2_1953_6 HRGMv2_1953_6_11 12451 13218 + 3.A.1.24.5
CAZyme HRGMv2_1953_6 HRGMv2_1953_6_12 13422 14765 + GH4
TC HRGMv2_1953_6 HRGMv2_1953_6_13 14785 16344 + 4.A.1.1.13
Gene ID: HRGMv2_1953_6_1
Type: TC
Location: 523 - 1017 (+)
Gene ID: HRGMv2_1953_6_2
Type: TC
Location: 1055 - 2839 (+)
Gene ID: HRGMv2_1953_6_3
Type: TC
Location: 2866 - 4623 (+)
Gene ID: HRGMv2_1953_6_4
Type: TF
Location: 4708 - 5562 (-)
Gene ID: HRGMv2_1953_6_5
Type: TC
Location: 5725 - 7068 (+)
Gene ID: HRGMv2_1953_6_6
Type: STP
Location: 7052 - 8167 (+)
Gene ID: HRGMv2_1953_6_7
Type: pfam
Location: 8364 - 9653 (-)
Gene ID: HRGMv2_1953_6_8
Type: TC
Location: 9958 - 10965 (+)
Gene ID: HRGMv2_1953_6_9
Type: TC
Location: 10955 - 11602 (+)
Gene ID: HRGMv2_1953_6_10
Type: TC
Location: 11634 - 12416 (+)
Gene ID: HRGMv2_1953_6_11
Type: TC
Location: 12451 - 13218 (+)
Gene ID: HRGMv2_1953_6_12
Type: CAZyme
Location: 13422 - 14765 (+)
Gene ID: HRGMv2_1953_6_13
Type: TC
Location: 14785 - 16344 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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