Cluster: HRGMv2_1953_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1953
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1953_5 | HRGMv2_1953_5_1 | 241 | 1167 | - | 3.A.1.11.8 |
| TC | HRGMv2_1953_5 | HRGMv2_1953_5_2 | 1188 | 2819 | - | 3.A.1.20.3 |
| TC | HRGMv2_1953_5 | HRGMv2_1953_5_3 | 2782 | 3774 | - | 3.A.1.20.1 |
| pfam | HRGMv2_1953_5 | HRGMv2_1953_5_4 | 3793 | 4413 | - | PHP | PHP_C |
| STP | HRGMv2_1953_5 | HRGMv2_1953_5_5 | 4711 | 4881 | - | Fer4 | Fer4 |
| CAZyme | HRGMv2_1953_5 | HRGMv2_1953_5_6 | 5037 | 5747 | - | GH73 |
Gene ID: HRGMv2_1953_5_1
Type: TC
Location: 241 - 1167 (-)
Type: TC
Location: 241 - 1167 (-)
Gene ID: HRGMv2_1953_5_2
Type: TC
Location: 1188 - 2819 (-)
Type: TC
Location: 1188 - 2819 (-)
Gene ID: HRGMv2_1953_5_3
Type: TC
Location: 2782 - 3774 (-)
Type: TC
Location: 2782 - 3774 (-)
Gene ID: HRGMv2_1953_5_4
Type: pfam
Location: 3793 - 4413 (-)
Type: pfam
Location: 3793 - 4413 (-)
Gene ID: HRGMv2_1953_5_5
Type: STP
Location: 4711 - 4881 (-)
Type: STP
Location: 4711 - 4881 (-)
Gene ID: HRGMv2_1953_5_6
Type: CAZyme
Location: 5037 - 5747 (-)
Type: CAZyme
Location: 5037 - 5747 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Fusobacteriota
Class
Fusobacteriia
Order
Fusobacteriales
Family
Fusobacteriaceae
Genus
Fusobacterium_A
Species
Fusobacterium_A ulcerans_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.