Cluster: HRGMv2_1953_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1953
- CGC Family ID: CGCFAM_00003
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1953_156 | HRGMv2_1953_156_2 | 1305 | 3449 | + | 9.B.18.2.1 |
| TC | HRGMv2_1953_156 | HRGMv2_1953_156_3 | 3499 | 4179 | + | 9.B.18.1.2 |
| pfam | HRGMv2_1953_156 | HRGMv2_1953_156_4 | 4179 | 5069 | + | 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| CAZyme | HRGMv2_1953_156 | HRGMv2_1953_156_5 | 5096 | 5929 | + | GT2 |
Gene ID: HRGMv2_1953_156_2
Type: TC
Location: 1305 - 3449 (+)
Type: TC
Location: 1305 - 3449 (+)
Gene ID: HRGMv2_1953_156_3
Type: TC
Location: 3499 - 4179 (+)
Type: TC
Location: 3499 - 4179 (+)
Gene ID: HRGMv2_1953_156_4
Type: pfam
Location: 4179 - 5069 (+)
Type: pfam
Location: 4179 - 5069 (+)
Gene ID: HRGMv2_1953_156_5
Type: CAZyme
Location: 5096 - 5929 (+)
Type: CAZyme
Location: 5096 - 5929 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Fusobacteriota
Class
Fusobacteriia
Order
Fusobacteriales
Family
Fusobacteriaceae
Genus
Fusobacterium_A
Species
Fusobacterium_A ulcerans_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.