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Cluster: HRGMv2_1953_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1953_44 HRGMv2_1953_44_3 5798 7039 + 5.A.1.2.1
STP HRGMv2_1953_44 HRGMv2_1953_44_4 7121 7720 + Nitroreductase
TC HRGMv2_1953_44 HRGMv2_1953_44_5 7836 9599 + 3.D.10.1.4
TF HRGMv2_1953_44 HRGMv2_1953_44_6 9860 10645 + TrmB
CAZyme HRGMv2_1953_44 HRGMv2_1953_44_7 10657 12171 + GH77
CAZyme HRGMv2_1953_44 HRGMv2_1953_44_8 12195 13808 + GT35
pfam HRGMv2_1953_44 HRGMv2_1953_44_9 13841 14572 + Phosphorylase
CAZyme HRGMv2_1953_44 HRGMv2_1953_44_10 14619 16589 + CBM48 | GH13_9
pfam HRGMv2_1953_44 HRGMv2_1953_44_11 16617 17762 + NTP_transferase | Hexapep_GlmU
pfam HRGMv2_1953_44 HRGMv2_1953_44_12 17782 18951 + NTP_transferase | Hexapep_GlmU
CAZyme HRGMv2_1953_44 HRGMv2_1953_44_13 18975 20354 + GT5
Gene ID: HRGMv2_1953_44_3
Type: TC
Location: 5798 - 7039 (+)
Gene ID: HRGMv2_1953_44_4
Type: STP
Location: 7121 - 7720 (+)
Gene ID: HRGMv2_1953_44_5
Type: TC
Location: 7836 - 9599 (+)
Gene ID: HRGMv2_1953_44_6
Type: TF
Location: 9860 - 10645 (+)
Gene ID: HRGMv2_1953_44_7
Type: CAZyme
Location: 10657 - 12171 (+)
Gene ID: HRGMv2_1953_44_8
Type: CAZyme
Location: 12195 - 13808 (+)
Gene ID: HRGMv2_1953_44_9
Type: pfam
Location: 13841 - 14572 (+)
Gene ID: HRGMv2_1953_44_10
Type: CAZyme
Location: 14619 - 16589 (+)
Gene ID: HRGMv2_1953_44_11
Type: pfam
Location: 16617 - 17762 (+)
Gene ID: HRGMv2_1953_44_12
Type: pfam
Location: 17782 - 18951 (+)
Gene ID: HRGMv2_1953_44_13
Type: CAZyme
Location: 18975 - 20354 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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