Cluster: HRGMv2_1953_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1953
- CGC Family ID: CGCFAM_05387
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1953_3 | HRGMv2_1953_3_20 | 21167 | 22351 | + | 2.A.120.1.3 |
| pfam | HRGMv2_1953_3 | HRGMv2_1953_3_21 | 22392 | 23465 | + | Fe-ADH | Fe-ADH_2 |
| CAZyme | HRGMv2_1953_3 | HRGMv2_1953_3_22 | 23535 | 24863 | - | GH4 |
| TC | HRGMv2_1953_3 | HRGMv2_1953_3_23 | 24892 | 26445 | - | 4.A.1.1.3 |
| TF | HRGMv2_1953_3 | HRGMv2_1953_3_24 | 26588 | 27325 | - | HTH_6 |
| pfam | HRGMv2_1953_3 | HRGMv2_1953_3_25 | 27415 | 29400 | - | FUSC_2 |
| TC | HRGMv2_1953_3 | HRGMv2_1953_3_26 | 29688 | 30209 | + | 9.B.143.2.3 |
Gene ID: HRGMv2_1953_3_20
Type: TC
Location: 21167 - 22351 (+)
Type: TC
Location: 21167 - 22351 (+)
Gene ID: HRGMv2_1953_3_21
Type: pfam
Location: 22392 - 23465 (+)
Type: pfam
Location: 22392 - 23465 (+)
Gene ID: HRGMv2_1953_3_22
Type: CAZyme
Location: 23535 - 24863 (-)
Type: CAZyme
Location: 23535 - 24863 (-)
Gene ID: HRGMv2_1953_3_23
Type: TC
Location: 24892 - 26445 (-)
Type: TC
Location: 24892 - 26445 (-)
Gene ID: HRGMv2_1953_3_24
Type: TF
Location: 26588 - 27325 (-)
Type: TF
Location: 26588 - 27325 (-)
Gene ID: HRGMv2_1953_3_25
Type: pfam
Location: 27415 - 29400 (-)
Type: pfam
Location: 27415 - 29400 (-)
Gene ID: HRGMv2_1953_3_26
Type: TC
Location: 29688 - 30209 (+)
Type: TC
Location: 29688 - 30209 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Fusobacteriota
Class
Fusobacteriia
Order
Fusobacteriales
Family
Fusobacteriaceae
Genus
Fusobacterium_A
Species
Fusobacterium_A ulcerans_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.