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Cluster: HRGMv2_1946_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1946_1 HRGMv2_1946_1_376 416647 417594 - GT8
CAZyme HRGMv2_1946_1 HRGMv2_1946_1_377 417585 418511 - GT2
pfam HRGMv2_1946_1 HRGMv2_1946_1_378 418523 419719 - AAA_14
CAZyme HRGMv2_1946_1 HRGMv2_1946_1_379 420034 420972 - GT2
pfam HRGMv2_1946_1 HRGMv2_1946_1_380 420996 421928 - Glycos_transf_2 | Glyco_tranf_2_2
pfam HRGMv2_1946_1 HRGMv2_1946_1_381 421951 422835 - Glycos_transf_2
TC HRGMv2_1946_1 HRGMv2_1946_1_382 422901 424175 - 3.A.1.103.5
TC HRGMv2_1946_1 HRGMv2_1946_1_383 424192 425040 - 3.A.1.103.6
Gene ID: HRGMv2_1946_1_376
Type: CAZyme
Location: 416647 - 417594 (-)
Gene ID: HRGMv2_1946_1_377
Type: CAZyme
Location: 417585 - 418511 (-)
Gene ID: HRGMv2_1946_1_378
Type: pfam
Location: 418523 - 419719 (-)
Gene ID: HRGMv2_1946_1_379
Type: CAZyme
Location: 420034 - 420972 (-)
Gene ID: HRGMv2_1946_1_380
Type: pfam
Location: 420996 - 421928 (-)
Gene ID: HRGMv2_1946_1_381
Type: pfam
Location: 421951 - 422835 (-)
Gene ID: HRGMv2_1946_1_382
Type: TC
Location: 422901 - 424175 (-)
Gene ID: HRGMv2_1946_1_383
Type: TC
Location: 424192 - 425040 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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