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Cluster: HRGMv2_1946_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1946_4 HRGMv2_1946_4_9 9665 10387 - 1.A.30.2.9
pfam HRGMv2_1946_4 HRGMv2_1946_4_10 10569 11870 - SHMT
NULL(UNKNOWN) HRGMv2_1946_4 HRGMv2_1946_4_11 11857 12054 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1946_4 HRGMv2_1946_4_12 12143 14737 + 3.A.9.1.2
CAZyme HRGMv2_1946_4 HRGMv2_1946_4_13 14894 16654 + GT35
pfam HRGMv2_1946_4 HRGMv2_1946_4_14 16961 17656 + Cytidylate_kin | Cytidylate_kin2
NULL(UNKNOWN) HRGMv2_1946_4 HRGMv2_1946_4_15 17888 19561 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1946_4 HRGMv2_1946_4_16 19706 21580 - 2.A.16.2.2
Gene ID: HRGMv2_1946_4_9
Type: TC
Location: 9665 - 10387 (-)
Gene ID: HRGMv2_1946_4_10
Type: pfam
Location: 10569 - 11870 (-)
Gene ID: HRGMv2_1946_4_11
Type:
Location: 11857 - 12054 (-)
Gene ID: HRGMv2_1946_4_12
Type: TC
Location: 12143 - 14737 (+)
Gene ID: HRGMv2_1946_4_13
Type: CAZyme
Location: 14894 - 16654 (+)
Gene ID: HRGMv2_1946_4_14
Type: pfam
Location: 16961 - 17656 (+)
Gene ID: HRGMv2_1946_4_15
Type:
Location: 17888 - 19561 (+)
Gene ID: HRGMv2_1946_4_16
Type: TC
Location: 19706 - 21580 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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