Cluster: HRGMv2_1945_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1945
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1945_15 | HRGMv2_1945_15_10 | 11354 | 12892 | - | 9.B.157.1.3 |
| NULL(UNKNOWN) | HRGMv2_1945_15 | HRGMv2_1945_15_11 | 12908 | 13642 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1945_15 | HRGMv2_1945_15_12 | 13665 | 14813 | - | GT28 |
| TC | HRGMv2_1945_15 | HRGMv2_1945_15_13 | 14810 | 16153 | - | 2.A.103.1.4 |
| TC | HRGMv2_1945_15 | HRGMv2_1945_15_14 | 16172 | 17425 | - | 9.B.146.1.3 |
Gene ID: HRGMv2_1945_15_10
Type: TC
Location: 11354 - 12892 (-)
Type: TC
Location: 11354 - 12892 (-)
Gene ID: HRGMv2_1945_15_11
Type:
Location: 12908 - 13642 (-)
Type:
Location: 12908 - 13642 (-)
Gene ID: HRGMv2_1945_15_12
Type: CAZyme
Location: 13665 - 14813 (-)
Type: CAZyme
Location: 13665 - 14813 (-)
Gene ID: HRGMv2_1945_15_13
Type: TC
Location: 14810 - 16153 (-)
Type: TC
Location: 14810 - 16153 (-)
Gene ID: HRGMv2_1945_15_14
Type: TC
Location: 16172 - 17425 (-)
Type: TC
Location: 16172 - 17425 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Flavobacteriales
Family
UBA1820
Genus
Merdimorpha
Species
Merdimorpha stercoravium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1945_15_11 | vegetarian > vegan | 1.44897 | 0.02242 |
| HRGMv2_1945_15_14 | vegetarian > vegan | 1.26478 | 0.02242 |