Cluster: HRGMv2_1919_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1919
- CGC Family ID: CGCFAM_00007
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1919_2 | HRGMv2_1919_2_64 | 71256 | 72017 | - | 3.A.1.103.4 |
| TC | HRGMv2_1919_2 | HRGMv2_1919_2_65 | 72021 | 72824 | - | 3.A.1.103.2 |
| NULL(UNKNOWN) | HRGMv2_1919_2 | HRGMv2_1919_2_66 | 72839 | 73216 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1919_2 | HRGMv2_1919_2_67 | 73197 | 75326 | - | GT4 | GT4 |
| pfam | HRGMv2_1919_2 | HRGMv2_1919_2_68 | 75331 | 76410 | - | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | HRGMv2_1919_2 | HRGMv2_1919_2_69 | 76427 | 77260 | - | GT26 |
Gene ID: HRGMv2_1919_2_64
Type: TC
Location: 71256 - 72017 (-)
Type: TC
Location: 71256 - 72017 (-)
Gene ID: HRGMv2_1919_2_65
Type: TC
Location: 72021 - 72824 (-)
Type: TC
Location: 72021 - 72824 (-)
Gene ID: HRGMv2_1919_2_66
Type:
Location: 72839 - 73216 (-)
Type:
Location: 72839 - 73216 (-)
Gene ID: HRGMv2_1919_2_67
Type: CAZyme
Location: 73197 - 75326 (-)
Type: CAZyme
Location: 73197 - 75326 (-)
Gene ID: HRGMv2_1919_2_68
Type: pfam
Location: 75331 - 76410 (-)
Type: pfam
Location: 75331 - 76410 (-)
Gene ID: HRGMv2_1919_2_69
Type: CAZyme
Location: 76427 - 77260 (-)
Type: CAZyme
Location: 76427 - 77260 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Merdibacter
Species
Merdibacter merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.