Cluster: HRGMv2_1919_CGC29
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1919
- CGC Family ID: CGCFAM_00717
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1919_32 | HRGMv2_1919_32_19 | 22561 | 24483 | + | 4.A.1.2.12 |
| CAZyme | HRGMv2_1919_32 | HRGMv2_1919_32_20 | 24476 | 25924 | + | GH32 |
| STP | HRGMv2_1919_32 | HRGMv2_1919_32_21 | 25940 | 26947 | + | PfkB |
| STP | HRGMv2_1919_32 | HRGMv2_1919_32_22 | 27049 | 27573 | + | Nitroreductase | Nitroreductase |
| TC | HRGMv2_1919_32 | HRGMv2_1919_32_23 | 27658 | 28629 | - | 1.A.33.1.5 |
Gene ID: HRGMv2_1919_32_19
Type: TC
Location: 22561 - 24483 (+)
Type: TC
Location: 22561 - 24483 (+)
Gene ID: HRGMv2_1919_32_20
Type: CAZyme
Location: 24476 - 25924 (+)
Type: CAZyme
Location: 24476 - 25924 (+)
Gene ID: HRGMv2_1919_32_21
Type: STP
Location: 25940 - 26947 (+)
Type: STP
Location: 25940 - 26947 (+)
Gene ID: HRGMv2_1919_32_22
Type: STP
Location: 27049 - 27573 (+)
Type: STP
Location: 27049 - 27573 (+)
Gene ID: HRGMv2_1919_32_23
Type: TC
Location: 27658 - 28629 (-)
Type: TC
Location: 27658 - 28629 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Merdibacter
Species
Merdibacter merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.