Cluster: HRGMv2_1919_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1919
- CGC Family ID: CGCFAM_07957
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1919_19 | HRGMv2_1919_19_8 | 4860 | 6689 | - | CBM48 | GH13_9 |
| TC | HRGMv2_1919_19 | HRGMv2_1919_19_9 | 6871 | 8736 | - | 3.A.1.135.5 |
| TC | HRGMv2_1919_19 | HRGMv2_1919_19_10 | 8729 | 10474 | - | 3.A.1.135.5 |
| TF | HRGMv2_1919_19 | HRGMv2_1919_19_11 | 10491 | 10919 | - | MarR |
| pfam | HRGMv2_1919_19 | HRGMv2_1919_19_12 | 11050 | 12108 | - | Glycos_transf_4 |
| TC | HRGMv2_1919_19 | HRGMv2_1919_19_13 | 12119 | 13105 | - | 9.B.157.1.2 |
Gene ID: HRGMv2_1919_19_8
Type: CAZyme
Location: 4860 - 6689 (-)
Type: CAZyme
Location: 4860 - 6689 (-)
Gene ID: HRGMv2_1919_19_9
Type: TC
Location: 6871 - 8736 (-)
Type: TC
Location: 6871 - 8736 (-)
Gene ID: HRGMv2_1919_19_10
Type: TC
Location: 8729 - 10474 (-)
Type: TC
Location: 8729 - 10474 (-)
Gene ID: HRGMv2_1919_19_11
Type: TF
Location: 10491 - 10919 (-)
Type: TF
Location: 10491 - 10919 (-)
Gene ID: HRGMv2_1919_19_12
Type: pfam
Location: 11050 - 12108 (-)
Type: pfam
Location: 11050 - 12108 (-)
Gene ID: HRGMv2_1919_19_13
Type: TC
Location: 12119 - 13105 (-)
Type: TC
Location: 12119 - 13105 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Merdibacter
Species
Merdibacter merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.