Cluster: HRGMv2_1913_CGC28
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: beta-glucan
- Genome ID: HRGMv2_1913
- CGC Family ID: CGCFAM_00042
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1913_23 | HRGMv2_1913_23_24 | 22930 | 23802 | + | 3.A.1.148.3 |
| NULL(UNKNOWN) | HRGMv2_1913_23 | HRGMv2_1913_23_25 | 23799 | 25268 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1913_23 | HRGMv2_1913_23_26 | 26186 | 27610 | - | GH1 |
| pfam | HRGMv2_1913_23 | HRGMv2_1913_23_27 | 27610 | 27957 | - | PTS_IIA |
| TC | HRGMv2_1913_23 | HRGMv2_1913_23_28 | 27950 | 29191 | - | 4.A.3.2.6 |
Gene ID: HRGMv2_1913_23_24
Type: TC
Location: 22930 - 23802 (+)
Type: TC
Location: 22930 - 23802 (+)
Gene ID: HRGMv2_1913_23_25
Type:
Location: 23799 - 25268 (+)
Type:
Location: 23799 - 25268 (+)
Gene ID: HRGMv2_1913_23_26
Type: CAZyme
Location: 26186 - 27610 (-)
Type: CAZyme
Location: 26186 - 27610 (-)
Gene ID: HRGMv2_1913_23_27
Type: pfam
Location: 27610 - 27957 (-)
Type: pfam
Location: 27610 - 27957 (-)
Gene ID: HRGMv2_1913_23_28
Type: TC
Location: 27950 - 29191 (-)
Type: TC
Location: 27950 - 29191 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Clostridium_AQ
Species
Clostridium_AQ sp000165065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.