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Cluster: HRGMv2_1911_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1911_4 HRGMv2_1911_4_20 18912 20888 - GT4
pfam HRGMv2_1911_4 HRGMv2_1911_4_21 20888 21919 - LPG_synthase_TM
CAZyme HRGMv2_1911_4 HRGMv2_1911_4_22 21928 22965 - GT4
NULL(UNKNOWN) HRGMv2_1911_4 HRGMv2_1911_4_23 23045 23374 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1911_4 HRGMv2_1911_4_24 23442 24266 - 4.A.6.1.17
TC HRGMv2_1911_4 HRGMv2_1911_4_25 24269 25117 - 4.A.6.1.18
TC HRGMv2_1911_4 HRGMv2_1911_4_26 25181 25672 - 4.A.6.1.9
TC HRGMv2_1911_4 HRGMv2_1911_4_27 25738 26169 - 4.A.6.1.7
Gene ID: HRGMv2_1911_4_20
Type: CAZyme
Location: 18912 - 20888 (-)
Gene ID: HRGMv2_1911_4_21
Type: pfam
Location: 20888 - 21919 (-)
Gene ID: HRGMv2_1911_4_22
Type: CAZyme
Location: 21928 - 22965 (-)
Gene ID: HRGMv2_1911_4_23
Type:
Location: 23045 - 23374 (-)
Gene ID: HRGMv2_1911_4_24
Type: TC
Location: 23442 - 24266 (-)
Gene ID: HRGMv2_1911_4_25
Type: TC
Location: 24269 - 25117 (-)
Gene ID: HRGMv2_1911_4_26
Type: TC
Location: 25181 - 25672 (-)
Gene ID: HRGMv2_1911_4_27
Type: TC
Location: 25738 - 26169 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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