Cluster: HRGMv2_1911_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1911
- CGC Family ID: CGCFAM_02890
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1911_30 | HRGMv2_1911_30_3 | 1261 | 3624 | - | GT51 |
| pfam | HRGMv2_1911_30 | HRGMv2_1911_30_4 | 3605 | 4213 | - | RecU |
| TC | HRGMv2_1911_30 | HRGMv2_1911_30_5 | 4348 | 6897 | + | 3.A.1.122.13 |
| pfam | HRGMv2_1911_30 | HRGMv2_1911_30_6 | 6960 | 7460 | + | DivIVA |
| TC | HRGMv2_1911_30 | HRGMv2_1911_30_7 | 7856 | 8788 | + | 1.A.35.3.1 |
| TC | HRGMv2_1911_30 | HRGMv2_1911_30_8 | 8802 | 9293 | + | 3.D.1.8.1 |
Gene ID: HRGMv2_1911_30_3
Type: CAZyme
Location: 1261 - 3624 (-)
Type: CAZyme
Location: 1261 - 3624 (-)
Gene ID: HRGMv2_1911_30_4
Type: pfam
Location: 3605 - 4213 (-)
Type: pfam
Location: 3605 - 4213 (-)
Gene ID: HRGMv2_1911_30_5
Type: TC
Location: 4348 - 6897 (+)
Type: TC
Location: 4348 - 6897 (+)
Gene ID: HRGMv2_1911_30_6
Type: pfam
Location: 6960 - 7460 (+)
Type: pfam
Location: 6960 - 7460 (+)
Gene ID: HRGMv2_1911_30_7
Type: TC
Location: 7856 - 8788 (+)
Type: TC
Location: 7856 - 8788 (+)
Gene ID: HRGMv2_1911_30_8
Type: TC
Location: 8802 - 9293 (+)
Type: TC
Location: 8802 - 9293 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Absicoccus
Species
Absicoccus porci
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.