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Cluster: HRGMv2_1911_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1911_24 HRGMv2_1911_24_19 13591 14223 + 2.A.115.2.9
TC HRGMv2_1911_24 HRGMv2_1911_24_20 14319 15851 + 2.A.21.2.5
TF HRGMv2_1911_24 HRGMv2_1911_24_21 15851 16711 + HTH_1
pfam HRGMv2_1911_24 HRGMv2_1911_24_22 16719 17150 - ThrE | ThrE_2
TC HRGMv2_1911_24 HRGMv2_1911_24_23 17162 17914 - 2.A.79.1.4
TC HRGMv2_1911_24 HRGMv2_1911_24_24 17990 19372 + 3.A.18.1.1
TC HRGMv2_1911_24 HRGMv2_1911_24_25 19361 19924 - 2.A.107.1.2
TC HRGMv2_1911_24 HRGMv2_1911_24_26 19935 20597 - 9.B.143.2.3
pfam HRGMv2_1911_24 HRGMv2_1911_24_27 20658 21989 - ELFV_dehydrog | ELFV_dehydrog_N
CAZyme HRGMv2_1911_24 HRGMv2_1911_24_28 22118 23563 + GH13_5
Gene ID: HRGMv2_1911_24_19
Type: TC
Location: 13591 - 14223 (+)
Gene ID: HRGMv2_1911_24_20
Type: TC
Location: 14319 - 15851 (+)
Gene ID: HRGMv2_1911_24_21
Type: TF
Location: 15851 - 16711 (+)
Gene ID: HRGMv2_1911_24_22
Type: pfam
Location: 16719 - 17150 (-)
Gene ID: HRGMv2_1911_24_23
Type: TC
Location: 17162 - 17914 (-)
Gene ID: HRGMv2_1911_24_24
Type: TC
Location: 17990 - 19372 (+)
Gene ID: HRGMv2_1911_24_25
Type: TC
Location: 19361 - 19924 (-)
Gene ID: HRGMv2_1911_24_26
Type: TC
Location: 19935 - 20597 (-)
Gene ID: HRGMv2_1911_24_27
Type: pfam
Location: 20658 - 21989 (-)
Gene ID: HRGMv2_1911_24_28
Type: CAZyme
Location: 22118 - 23563 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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