Cluster: HRGMv2_1911_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1911
- CGC Family ID: CGCFAM_01532
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1911_18 | HRGMv2_1911_18_31 | 28864 | 30756 | - | 3.A.1.11.7 |
| TC | HRGMv2_1911_18 | HRGMv2_1911_18_32 | 30753 | 31589 | - | 3.A.1.11.2 |
| TC | HRGMv2_1911_18 | HRGMv2_1911_18_33 | 31589 | 33169 | - | 3.A.1.11.8 |
| TF | HRGMv2_1911_18 | HRGMv2_1911_18_34 | 33184 | 33717 | - | HTH_3 |
| pfam | HRGMv2_1911_18 | HRGMv2_1911_18_35 | 33894 | 34763 | + | SAICAR_synt |
| CAZyme | HRGMv2_1911_18 | HRGMv2_1911_18_36 | 34792 | 36270 | - | GH77 |
| TC | HRGMv2_1911_18 | HRGMv2_1911_18_37 | 36347 | 37099 | - | 1.A.16.3.3 |
Gene ID: HRGMv2_1911_18_31
Type: TC
Location: 28864 - 30756 (-)
Type: TC
Location: 28864 - 30756 (-)
Gene ID: HRGMv2_1911_18_32
Type: TC
Location: 30753 - 31589 (-)
Type: TC
Location: 30753 - 31589 (-)
Gene ID: HRGMv2_1911_18_33
Type: TC
Location: 31589 - 33169 (-)
Type: TC
Location: 31589 - 33169 (-)
Gene ID: HRGMv2_1911_18_34
Type: TF
Location: 33184 - 33717 (-)
Type: TF
Location: 33184 - 33717 (-)
Gene ID: HRGMv2_1911_18_35
Type: pfam
Location: 33894 - 34763 (+)
Type: pfam
Location: 33894 - 34763 (+)
Gene ID: HRGMv2_1911_18_36
Type: CAZyme
Location: 34792 - 36270 (-)
Type: CAZyme
Location: 34792 - 36270 (-)
Gene ID: HRGMv2_1911_18_37
Type: TC
Location: 36347 - 37099 (-)
Type: TC
Location: 36347 - 37099 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Absicoccus
Species
Absicoccus porci
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.