Cluster: HRGMv2_1906_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1906
- CGC Family ID: CGCFAM_08013
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1906_2 | HRGMv2_1906_2_125 | 131822 | 132850 | - | GT4 |
| pfam | HRGMv2_1906_2 | HRGMv2_1906_2_126 | 133274 | 134599 | + | AAA_14 | DUF4143 |
| TF | HRGMv2_1906_2 | HRGMv2_1906_2_127 | 134751 | 135644 | + | HTH_6 |
| CAZyme | HRGMv2_1906_2 | HRGMv2_1906_2_128 | 135766 | 137172 | + | GH1 |
| TC | HRGMv2_1906_2 | HRGMv2_1906_2_129 | 137190 | 138476 | + | 4.A.3.2.8 |
Gene ID: HRGMv2_1906_2_125
Type: CAZyme
Location: 131822 - 132850 (-)
Type: CAZyme
Location: 131822 - 132850 (-)
Gene ID: HRGMv2_1906_2_126
Type: pfam
Location: 133274 - 134599 (+)
Type: pfam
Location: 133274 - 134599 (+)
Gene ID: HRGMv2_1906_2_127
Type: TF
Location: 134751 - 135644 (+)
Type: TF
Location: 134751 - 135644 (+)
Gene ID: HRGMv2_1906_2_128
Type: CAZyme
Location: 135766 - 137172 (+)
Type: CAZyme
Location: 135766 - 137172 (+)
Gene ID: HRGMv2_1906_2_129
Type: TC
Location: 137190 - 138476 (+)
Type: TC
Location: 137190 - 138476 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Species
Allocoprobacillus sp002160865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.