Cluster: HRGMv2_1906_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1906
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1906_2 | HRGMv2_1906_2_87 | 94967 | 96631 | + | GH13_31 |
| peptidase | HRGMv2_1906_2 | HRGMv2_1906_2_88 | 96644 | 98026 | + | M17.UPW |
| TC | HRGMv2_1906_2 | HRGMv2_1906_2_89 | 98046 | 99905 | - | 3.A.1.135.5 |
| TC | HRGMv2_1906_2 | HRGMv2_1906_2_90 | 99905 | 101629 | - | 3.A.1.135.5 |
| TF | HRGMv2_1906_2 | HRGMv2_1906_2_91 | 101641 | 102069 | - | MarR |
| TC | HRGMv2_1906_2 | HRGMv2_1906_2_92 | 102217 | 103260 | + | 9.B.10.1.1 |
Gene ID: HRGMv2_1906_2_87
Type: CAZyme
Location: 94967 - 96631 (+)
Type: CAZyme
Location: 94967 - 96631 (+)
Gene ID: HRGMv2_1906_2_88
Type: peptidase
Location: 96644 - 98026 (+)
Type: peptidase
Location: 96644 - 98026 (+)
Gene ID: HRGMv2_1906_2_89
Type: TC
Location: 98046 - 99905 (-)
Type: TC
Location: 98046 - 99905 (-)
Gene ID: HRGMv2_1906_2_90
Type: TC
Location: 99905 - 101629 (-)
Type: TC
Location: 99905 - 101629 (-)
Gene ID: HRGMv2_1906_2_91
Type: TF
Location: 101641 - 102069 (-)
Type: TF
Location: 101641 - 102069 (-)
Gene ID: HRGMv2_1906_2_92
Type: TC
Location: 102217 - 103260 (+)
Type: TC
Location: 102217 - 103260 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Species
Allocoprobacillus sp002160865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1906_2_89 | vegan > omnivore | 1.24179 | 0.01186 |