Cluster: HRGMv2_1906_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1906
- CGC Family ID: CGCFAM_02353
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1906_2 | HRGMv2_1906_2_67 | 72670 | 74880 | - | GH3 |
| TF | HRGMv2_1906_2 | HRGMv2_1906_2_68 | 74898 | 75659 | - | HTH_6 |
| CAZyme | HRGMv2_1906_2 | HRGMv2_1906_2_69 | 75698 | 78358 | - | GH38 |
| TC | HRGMv2_1906_2 | HRGMv2_1906_2_70 | 78336 | 79676 | - | 4.A.3.2.8 |
| CAZyme | HRGMv2_1906_2 | HRGMv2_1906_2_71 | 79788 | 81050 | - | GH125 |
Gene ID: HRGMv2_1906_2_67
Type: CAZyme
Location: 72670 - 74880 (-)
Type: CAZyme
Location: 72670 - 74880 (-)
Gene ID: HRGMv2_1906_2_68
Type: TF
Location: 74898 - 75659 (-)
Type: TF
Location: 74898 - 75659 (-)
Gene ID: HRGMv2_1906_2_69
Type: CAZyme
Location: 75698 - 78358 (-)
Type: CAZyme
Location: 75698 - 78358 (-)
Gene ID: HRGMv2_1906_2_70
Type: TC
Location: 78336 - 79676 (-)
Type: TC
Location: 78336 - 79676 (-)
Gene ID: HRGMv2_1906_2_71
Type: CAZyme
Location: 79788 - 81050 (-)
Type: CAZyme
Location: 79788 - 81050 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Species
Allocoprobacillus sp002160865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.