Cluster: HRGMv2_1906_CGC31
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1906
- CGC Family ID: CGCFAM_04727
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1906_35 | HRGMv2_1906_35_13 | 11350 | 12675 | + | 4.A.3.2.9 |
| TF | HRGMv2_1906_35 | HRGMv2_1906_35_14 | 12758 | 13519 | + | 0040266 |
| pfam | HRGMv2_1906_35 | HRGMv2_1906_35_15 | 13523 | 14557 | + | UxuA |
| CAZyme | HRGMv2_1906_35 | HRGMv2_1906_35_16 | 14562 | 15983 | + | GH1 |
Gene ID: HRGMv2_1906_35_13
Type: TC
Location: 11350 - 12675 (+)
Type: TC
Location: 11350 - 12675 (+)
Gene ID: HRGMv2_1906_35_14
Type: TF
Location: 12758 - 13519 (+)
Type: TF
Location: 12758 - 13519 (+)
Gene ID: HRGMv2_1906_35_15
Type: pfam
Location: 13523 - 14557 (+)
Type: pfam
Location: 13523 - 14557 (+)
Gene ID: HRGMv2_1906_35_16
Type: CAZyme
Location: 14562 - 15983 (+)
Type: CAZyme
Location: 14562 - 15983 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Species
Allocoprobacillus sp002160865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.