Cluster: HRGMv2_1906_CGC28
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1906
- CGC Family ID: CGCFAM_09901
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1906_30 | HRGMv2_1906_30_1 | 243 | 1190 | + | 1.A.35.3.1 |
| CAZyme | HRGMv2_1906_30 | HRGMv2_1906_30_2 | 1293 | 2765 | + | GH1 |
| pfam | HRGMv2_1906_30 | HRGMv2_1906_30_3 | 2768 | 3019 | + | FakA-like_M |
| TC | HRGMv2_1906_30 | HRGMv2_1906_30_4 | 3022 | 3948 | + | 2.A.69.4.5 |
Gene ID: HRGMv2_1906_30_1
Type: TC
Location: 243 - 1190 (+)
Type: TC
Location: 243 - 1190 (+)
Gene ID: HRGMv2_1906_30_2
Type: CAZyme
Location: 1293 - 2765 (+)
Type: CAZyme
Location: 1293 - 2765 (+)
Gene ID: HRGMv2_1906_30_3
Type: pfam
Location: 2768 - 3019 (+)
Type: pfam
Location: 2768 - 3019 (+)
Gene ID: HRGMv2_1906_30_4
Type: TC
Location: 3022 - 3948 (+)
Type: TC
Location: 3022 - 3948 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Species
Allocoprobacillus sp002160865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.