Cluster: HRGMv2_1906_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1906
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1906_23 | HRGMv2_1906_23_1 | 289 | 1731 | - | GH1 |
| TC | HRGMv2_1906_23 | HRGMv2_1906_23_2 | 1830 | 2972 | - | 2.A.86.1.11 |
| TC | HRGMv2_1906_23 | HRGMv2_1906_23_3 | 3025 | 3498 | - | 2.A.88.9.1 |
| pfam | HRGMv2_1906_23 | HRGMv2_1906_23_4 | 3598 | 4440 | + | S6PP | S6PP | Hydrolase_3 |
| TC | HRGMv2_1906_23 | HRGMv2_1906_23_5 | 4474 | 5100 | - | 3.A.1.122.14 |
Gene ID: HRGMv2_1906_23_1
Type: CAZyme
Location: 289 - 1731 (-)
Type: CAZyme
Location: 289 - 1731 (-)
Gene ID: HRGMv2_1906_23_2
Type: TC
Location: 1830 - 2972 (-)
Type: TC
Location: 1830 - 2972 (-)
Gene ID: HRGMv2_1906_23_3
Type: TC
Location: 3025 - 3498 (-)
Type: TC
Location: 3025 - 3498 (-)
Gene ID: HRGMv2_1906_23_4
Type: pfam
Location: 3598 - 4440 (+)
Type: pfam
Location: 3598 - 4440 (+)
Gene ID: HRGMv2_1906_23_5
Type: TC
Location: 4474 - 5100 (-)
Type: TC
Location: 4474 - 5100 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Species
Allocoprobacillus sp002160865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1906_23_1 | vegan > omnivore | 2.05754 | 0.01186 |