Cluster: HRGMv2_1906_CGC21
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1906
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1906_18 | HRGMv2_1906_18_26 | 27806 | 29152 | + | 4.A.3.2.3 |
| pfam | HRGMv2_1906_18 | HRGMv2_1906_18_27 | 29207 | 30106 | + | BcrAD_BadFG |
| CAZyme | HRGMv2_1906_18 | HRGMv2_1906_18_28 | 30108 | 31532 | + | GH1 |
| pfam | HRGMv2_1906_18 | HRGMv2_1906_18_29 | 32231 | 33334 | + | Metallophos |
| NULL(UNKNOWN) | HRGMv2_1906_18 | HRGMv2_1906_18_30 | 33365 | 33772 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1906_18 | HRGMv2_1906_18_31 | 33881 | 34750 | + | 3.A.1.126.1 |
Gene ID: HRGMv2_1906_18_26
Type: TC
Location: 27806 - 29152 (+)
Type: TC
Location: 27806 - 29152 (+)
Gene ID: HRGMv2_1906_18_27
Type: pfam
Location: 29207 - 30106 (+)
Type: pfam
Location: 29207 - 30106 (+)
Gene ID: HRGMv2_1906_18_28
Type: CAZyme
Location: 30108 - 31532 (+)
Type: CAZyme
Location: 30108 - 31532 (+)
Gene ID: HRGMv2_1906_18_29
Type: pfam
Location: 32231 - 33334 (+)
Type: pfam
Location: 32231 - 33334 (+)
Gene ID: HRGMv2_1906_18_30
Type:
Location: 33365 - 33772 (+)
Type:
Location: 33365 - 33772 (+)
Gene ID: HRGMv2_1906_18_31
Type: TC
Location: 33881 - 34750 (+)
Type: TC
Location: 33881 - 34750 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Species
Allocoprobacillus sp002160865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.