Cluster: HRGMv2_1906_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1906
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1906_18 | HRGMv2_1906_18_11 | 9143 | 11356 | - | GH36 |
| pfam | HRGMv2_1906_18 | HRGMv2_1906_18_12 | 11360 | 11782 | - | VanZ |
| CAZyme | HRGMv2_1906_18 | HRGMv2_1906_18_13 | 11835 | 13253 | - | GH1 |
| CAZyme | HRGMv2_1906_18 | HRGMv2_1906_18_14 | 13331 | 14749 | - | GH1 |
| pfam | HRGMv2_1906_18 | HRGMv2_1906_18_15 | 14907 | 15275 | + | DUF2500 |
| TC | HRGMv2_1906_18 | HRGMv2_1906_18_16 | 15286 | 17148 | - | 3.A.1.121.4 |
Gene ID: HRGMv2_1906_18_11
Type: CAZyme
Location: 9143 - 11356 (-)
Type: CAZyme
Location: 9143 - 11356 (-)
Gene ID: HRGMv2_1906_18_12
Type: pfam
Location: 11360 - 11782 (-)
Type: pfam
Location: 11360 - 11782 (-)
Gene ID: HRGMv2_1906_18_13
Type: CAZyme
Location: 11835 - 13253 (-)
Type: CAZyme
Location: 11835 - 13253 (-)
Gene ID: HRGMv2_1906_18_14
Type: CAZyme
Location: 13331 - 14749 (-)
Type: CAZyme
Location: 13331 - 14749 (-)
Gene ID: HRGMv2_1906_18_15
Type: pfam
Location: 14907 - 15275 (+)
Type: pfam
Location: 14907 - 15275 (+)
Gene ID: HRGMv2_1906_18_16
Type: TC
Location: 15286 - 17148 (-)
Type: TC
Location: 15286 - 17148 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Species
Allocoprobacillus sp002160865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.