Cluster: HRGMv2_1906_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1906
- CGC Family ID: CGCFAM_06812
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1906_14 | HRGMv2_1906_14_53 | 46981 | 49203 | + | 3.A.1.135.6 |
| TC | HRGMv2_1906_14 | HRGMv2_1906_14_54 | 49196 | 51019 | + | 3.A.1.135.6 |
| TC | HRGMv2_1906_14 | HRGMv2_1906_14_55 | 51249 | 51851 | + | 9.B.18.1.3 |
| CAZyme | HRGMv2_1906_14 | HRGMv2_1906_14_56 | 51852 | 52934 | + | GT4 |
| pfam | HRGMv2_1906_14 | HRGMv2_1906_14_57 | 52931 | 54037 | + | EpsG |
| CAZyme | HRGMv2_1906_14 | HRGMv2_1906_14_58 | 54034 | 55158 | + | GT4 |
Gene ID: HRGMv2_1906_14_53
Type: TC
Location: 46981 - 49203 (+)
Type: TC
Location: 46981 - 49203 (+)
Gene ID: HRGMv2_1906_14_54
Type: TC
Location: 49196 - 51019 (+)
Type: TC
Location: 49196 - 51019 (+)
Gene ID: HRGMv2_1906_14_55
Type: TC
Location: 51249 - 51851 (+)
Type: TC
Location: 51249 - 51851 (+)
Gene ID: HRGMv2_1906_14_56
Type: CAZyme
Location: 51852 - 52934 (+)
Type: CAZyme
Location: 51852 - 52934 (+)
Gene ID: HRGMv2_1906_14_57
Type: pfam
Location: 52931 - 54037 (+)
Type: pfam
Location: 52931 - 54037 (+)
Gene ID: HRGMv2_1906_14_58
Type: CAZyme
Location: 54034 - 55158 (+)
Type: CAZyme
Location: 54034 - 55158 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Species
Allocoprobacillus sp002160865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.