Cluster: HRGMv2_1906_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1906
- CGC Family ID: CGCFAM_09902
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1906_4 | HRGMv2_1906_4_1 | 425 | 5380 | + | CBM32 | CBM32 | CBM32 |
| TF | HRGMv2_1906_4 | HRGMv2_1906_4_2 | 5840 | 6844 | + | LacI |
| NULL(UNKNOWN) | HRGMv2_1906_4 | HRGMv2_1906_4_3 | 6881 | 7507 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1906_4 | HRGMv2_1906_4_4 | 7555 | 8559 | - | 8.A.5.1.4 |
Gene ID: HRGMv2_1906_4_1
Type: CAZyme
Location: 425 - 5380 (+)
Type: CAZyme
Location: 425 - 5380 (+)
Gene ID: HRGMv2_1906_4_2
Type: TF
Location: 5840 - 6844 (+)
Type: TF
Location: 5840 - 6844 (+)
Gene ID: HRGMv2_1906_4_3
Type:
Location: 6881 - 7507 (-)
Type:
Location: 6881 - 7507 (-)
Gene ID: HRGMv2_1906_4_4
Type: TC
Location: 7555 - 8559 (-)
Type: TC
Location: 7555 - 8559 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Species
Allocoprobacillus sp002160865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.