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Cluster: HRGMv2_1905_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1905_3 HRGMv2_1905_3_81 72937 74391 - GH1
pfam HRGMv2_1905_3 HRGMv2_1905_3_82 74588 75043 - LacAB_rpiB
NULL(UNKNOWN) HRGMv2_1905_3 HRGMv2_1905_3_83 75055 75987 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1905_3 HRGMv2_1905_3_84 75995 76294 - 4.A.3.2.2
pfam HRGMv2_1905_3 HRGMv2_1905_3_85 76311 76961 - Ribul_P_3_epim
CAZyme HRGMv2_1905_3 HRGMv2_1905_3_86 77131 78483 - GH1
pfam HRGMv2_1905_3 HRGMv2_1905_3_87 78483 79136 - Hydrolase | HAD_2
pfam HRGMv2_1905_3 HRGMv2_1905_3_88 79149 79835 - DeoC
CAZyme HRGMv2_1905_3 HRGMv2_1905_3_89 79902 81368 - GH1
Gene ID: HRGMv2_1905_3_81
Type: CAZyme
Location: 72937 - 74391 (-)
Gene ID: HRGMv2_1905_3_82
Type: pfam
Location: 74588 - 75043 (-)
Gene ID: HRGMv2_1905_3_83
Type:
Location: 75055 - 75987 (-)
Gene ID: HRGMv2_1905_3_84
Type: TC
Location: 75995 - 76294 (-)
Gene ID: HRGMv2_1905_3_85
Type: pfam
Location: 76311 - 76961 (-)
Gene ID: HRGMv2_1905_3_86
Type: CAZyme
Location: 77131 - 78483 (-)
Gene ID: HRGMv2_1905_3_87
Type: pfam
Location: 78483 - 79136 (-)
Gene ID: HRGMv2_1905_3_88
Type: pfam
Location: 79149 - 79835 (-)
Gene ID: HRGMv2_1905_3_89
Type: CAZyme
Location: 79902 - 81368 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1905_3_81 vegan > omnivore 1.65831 0.00396
HRGMv2_1905_3_82 vegan > omnivore 2.77340 0.00396
HRGMv2_1905_3_89 vegan > omnivore 2.04485 0.00396

🧭 Explore Read Mapping of CGC

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