Cluster: HRGMv2_1905_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1905
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1905_2 | HRGMv2_1905_2_101 | 95830 | 98034 | - | GH3 |
| TC | HRGMv2_1905_2 | HRGMv2_1905_2_102 | 98047 | 98427 | - | 4.A.3.2.6 |
| TC | HRGMv2_1905_2 | HRGMv2_1905_2_103 | 98442 | 99323 | - | 4.A.3.2.8 |
| TF | HRGMv2_1905_2 | HRGMv2_1905_2_104 | 99488 | 100333 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_1905_2 | HRGMv2_1905_2_105 | 100435 | 101892 | - | CBM91 | GH43_12 |
| CAZyme | HRGMv2_1905_2 | HRGMv2_1905_2_106 | 101896 | 102639 | - | CE1 |
Gene ID: HRGMv2_1905_2_101
Type: CAZyme
Location: 95830 - 98034 (-)
Type: CAZyme
Location: 95830 - 98034 (-)
Gene ID: HRGMv2_1905_2_102
Type: TC
Location: 98047 - 98427 (-)
Type: TC
Location: 98047 - 98427 (-)
Gene ID: HRGMv2_1905_2_103
Type: TC
Location: 98442 - 99323 (-)
Type: TC
Location: 98442 - 99323 (-)
Gene ID: HRGMv2_1905_2_104
Type: TF
Location: 99488 - 100333 (-)
Type: TF
Location: 99488 - 100333 (-)
Gene ID: HRGMv2_1905_2_105
Type: CAZyme
Location: 100435 - 101892 (-)
Type: CAZyme
Location: 100435 - 101892 (-)
Gene ID: HRGMv2_1905_2_106
Type: CAZyme
Location: 101896 - 102639 (-)
Type: CAZyme
Location: 101896 - 102639 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.