Cluster: HRGMv2_1905_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1905
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1905_23 | HRGMv2_1905_23_5 | 5101 | 6549 | - | GH1 |
| TF | HRGMv2_1905_23 | HRGMv2_1905_23_6 | 6539 | 7402 | - | HTH_6 |
| TC | HRGMv2_1905_23 | HRGMv2_1905_23_7 | 7449 | 8741 | - | 4.A.3.2.3 |
| pfam | HRGMv2_1905_23 | HRGMv2_1905_23_8 | 9496 | 9774 | + | Transposase_mut |
| pfam | HRGMv2_1905_23 | HRGMv2_1905_23_9 | 10310 | 10537 | - | Ribosomal_S18 |
| TC | HRGMv2_1905_23 | HRGMv2_1905_23_10 | 10552 | 11007 | - | 3.A.7.19.1 |
Gene ID: HRGMv2_1905_23_5
Type: CAZyme
Location: 5101 - 6549 (-)
Type: CAZyme
Location: 5101 - 6549 (-)
Gene ID: HRGMv2_1905_23_6
Type: TF
Location: 6539 - 7402 (-)
Type: TF
Location: 6539 - 7402 (-)
Gene ID: HRGMv2_1905_23_7
Type: TC
Location: 7449 - 8741 (-)
Type: TC
Location: 7449 - 8741 (-)
Gene ID: HRGMv2_1905_23_8
Type: pfam
Location: 9496 - 9774 (+)
Type: pfam
Location: 9496 - 9774 (+)
Gene ID: HRGMv2_1905_23_9
Type: pfam
Location: 10310 - 10537 (-)
Type: pfam
Location: 10310 - 10537 (-)
Gene ID: HRGMv2_1905_23_10
Type: TC
Location: 10552 - 11007 (-)
Type: TC
Location: 10552 - 11007 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1905_23_10 | vegan > omnivore | 1.89693 | 0.00396 |