Cluster: HRGMv2_1905_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1905
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1905_14 | HRGMv2_1905_14_48 | 45965 | 46810 | - | 3.A.1.149.1 |
| TF | HRGMv2_1905_14 | HRGMv2_1905_14_49 | 46813 | 47184 | - | GntR |
| pfam | HRGMv2_1905_14 | HRGMv2_1905_14_50 | 47281 | 47700 | - | Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10 |
| TC | HRGMv2_1905_14 | HRGMv2_1905_14_51 | 47878 | 48861 | + | 8.A.5.1.6 |
| NULL(UNKNOWN) | HRGMv2_1905_14 | HRGMv2_1905_14_52 | 48877 | 49374 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1905_14 | HRGMv2_1905_14_53 | 49577 | 50791 | + | PGA_cap |
| CAZyme | HRGMv2_1905_14 | HRGMv2_1905_14_54 | 50801 | 52240 | - | GH1 |
Gene ID: HRGMv2_1905_14_48
Type: TC
Location: 45965 - 46810 (-)
Type: TC
Location: 45965 - 46810 (-)
Gene ID: HRGMv2_1905_14_49
Type: TF
Location: 46813 - 47184 (-)
Type: TF
Location: 46813 - 47184 (-)
Gene ID: HRGMv2_1905_14_50
Type: pfam
Location: 47281 - 47700 (-)
Type: pfam
Location: 47281 - 47700 (-)
Gene ID: HRGMv2_1905_14_51
Type: TC
Location: 47878 - 48861 (+)
Type: TC
Location: 47878 - 48861 (+)
Gene ID: HRGMv2_1905_14_52
Type:
Location: 48877 - 49374 (+)
Type:
Location: 48877 - 49374 (+)
Gene ID: HRGMv2_1905_14_53
Type: pfam
Location: 49577 - 50791 (+)
Type: pfam
Location: 49577 - 50791 (+)
Gene ID: HRGMv2_1905_14_54
Type: CAZyme
Location: 50801 - 52240 (-)
Type: CAZyme
Location: 50801 - 52240 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1905_14_54 | vegan > omnivore | 1.63630 | 0.00396 |