Cluster: HRGMv2_1905_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1905
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1905_10 | HRGMv2_1905_10_63 | 62051 | 63496 | - | GH1 |
| pfam | HRGMv2_1905_10 | HRGMv2_1905_10_64 | 63575 | 63862 | - | DUF1905 |
| TC | HRGMv2_1905_10 | HRGMv2_1905_10_65 | 63859 | 65007 | - | 2.A.86.1.11 |
| TC | HRGMv2_1905_10 | HRGMv2_1905_10_66 | 65051 | 65533 | - | 2.A.88.9.1 |
Gene ID: HRGMv2_1905_10_63
Type: CAZyme
Location: 62051 - 63496 (-)
Type: CAZyme
Location: 62051 - 63496 (-)
Gene ID: HRGMv2_1905_10_64
Type: pfam
Location: 63575 - 63862 (-)
Type: pfam
Location: 63575 - 63862 (-)
Gene ID: HRGMv2_1905_10_65
Type: TC
Location: 63859 - 65007 (-)
Type: TC
Location: 63859 - 65007 (-)
Gene ID: HRGMv2_1905_10_66
Type: TC
Location: 65051 - 65533 (-)
Type: TC
Location: 65051 - 65533 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Allocoprobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1905_10_63 | vegan > omnivore | 1.13912 | 0.00396 |