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Cluster: HRGMv2_1905_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1905_10 HRGMv2_1905_10_35 32776 33720 - 3.A.1.5.19
TC HRGMv2_1905_10 HRGMv2_1905_10_36 33713 34801 - 3.A.1.5.19
TC HRGMv2_1905_10 HRGMv2_1905_10_37 34805 35743 - 3.A.1.5.19
TC HRGMv2_1905_10 HRGMv2_1905_10_38 35743 36690 - 3.A.1.5.19
TC HRGMv2_1905_10 HRGMv2_1905_10_39 36768 38408 - 3.A.1.5.2
CAZyme HRGMv2_1905_10 HRGMv2_1905_10_40 38646 40061 - GH32
TC HRGMv2_1905_10 HRGMv2_1905_10_41 40054 40347 - 4.A.1.1.13
TC HRGMv2_1905_10 HRGMv2_1905_10_42 40398 41930 - 4.A.1.2.8
Gene ID: HRGMv2_1905_10_35
Type: TC
Location: 32776 - 33720 (-)
Gene ID: HRGMv2_1905_10_36
Type: TC
Location: 33713 - 34801 (-)
Gene ID: HRGMv2_1905_10_37
Type: TC
Location: 34805 - 35743 (-)
Gene ID: HRGMv2_1905_10_38
Type: TC
Location: 35743 - 36690 (-)
Gene ID: HRGMv2_1905_10_39
Type: TC
Location: 36768 - 38408 (-)
Gene ID: HRGMv2_1905_10_40
Type: CAZyme
Location: 38646 - 40061 (-)
Gene ID: HRGMv2_1905_10_41
Type: TC
Location: 40054 - 40347 (-)
Gene ID: HRGMv2_1905_10_42
Type: TC
Location: 40398 - 41930 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1905_10_35 vegan > omnivore 1.35547 0.00396
HRGMv2_1905_10_35 vegetarian > omnivore 1.23170 0.02646
HRGMv2_1905_10_36 vegan > omnivore 2.02080 0.00396

🧭 Explore Read Mapping of CGC

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