Cluster: HRGMv2_1901_CGC7
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_1901
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1901_4 | HRGMv2_1901_4_83 | 100211 | 104755 | - | GH136 |
| CAZyme | HRGMv2_1901_4 | HRGMv2_1901_4_84 | 104975 | 111019 | - | GH84 |
| pfam | HRGMv2_1901_4 | HRGMv2_1901_4_85 | 111207 | 112031 | - | PRD | PRD | CAT_RBD |
| TC | HRGMv2_1901_4 | HRGMv2_1901_4_86 | 112238 | 113503 | - | 4.A.1.1.2 |
| TC | HRGMv2_1901_4 | HRGMv2_1901_4_87 | 113811 | 114293 | + | 4.A.1.1.14 |
| CAZyme | HRGMv2_1901_4 | HRGMv2_1901_4_88 | 114393 | 117011 | - | GH16_6 |
| CAZyme | HRGMv2_1901_4 | HRGMv2_1901_4_89 | 117078 | 122783 | - | GH84 |
| TC | HRGMv2_1901_4 | HRGMv2_1901_4_90 | 123110 | 125089 | - | 3.A.1.134.9 |
| TC | HRGMv2_1901_4 | HRGMv2_1901_4_91 | 125091 | 125849 | - | 3.A.1.134.4 |
| STP | HRGMv2_1901_4 | HRGMv2_1901_4_92 | 125953 | 126936 | - | HATPase_c |
| TF | HRGMv2_1901_4 | HRGMv2_1901_4_93 | 126929 | 127606 | - | Trans_reg_C |
| CAZyme | HRGMv2_1901_4 | HRGMv2_1901_4_94 | 127872 | 134048 | - | CBM32 | CBM32 | GH20 |
| CAZyme | HRGMv2_1901_4 | HRGMv2_1901_4_95 | 134839 | 136311 | - | GH1 |
| CAZyme | HRGMv2_1901_4 | HRGMv2_1901_4_96 | 136312 | 137742 | - | GH1 |
| TC | HRGMv2_1901_4 | HRGMv2_1901_4_97 | 137761 | 139047 | - | 4.A.3.1.1 |
| TC | HRGMv2_1901_4 | HRGMv2_1901_4_98 | 139061 | 139360 | - | 4.A.3.2.2 |
| TC | HRGMv2_1901_4 | HRGMv2_1901_4_99 | 139372 | 139686 | - | 4.A.3.1.3 |
Gene ID: HRGMv2_1901_4_83
Type: CAZyme
Location: 100211 - 104755 (-)
Type: CAZyme
Location: 100211 - 104755 (-)
Gene ID: HRGMv2_1901_4_84
Type: CAZyme
Location: 104975 - 111019 (-)
Type: CAZyme
Location: 104975 - 111019 (-)
Gene ID: HRGMv2_1901_4_85
Type: pfam
Location: 111207 - 112031 (-)
Type: pfam
Location: 111207 - 112031 (-)
Gene ID: HRGMv2_1901_4_86
Type: TC
Location: 112238 - 113503 (-)
Type: TC
Location: 112238 - 113503 (-)
Gene ID: HRGMv2_1901_4_87
Type: TC
Location: 113811 - 114293 (+)
Type: TC
Location: 113811 - 114293 (+)
Gene ID: HRGMv2_1901_4_88
Type: CAZyme
Location: 114393 - 117011 (-)
Type: CAZyme
Location: 114393 - 117011 (-)
Gene ID: HRGMv2_1901_4_89
Type: CAZyme
Location: 117078 - 122783 (-)
Type: CAZyme
Location: 117078 - 122783 (-)
Gene ID: HRGMv2_1901_4_90
Type: TC
Location: 123110 - 125089 (-)
Type: TC
Location: 123110 - 125089 (-)
Gene ID: HRGMv2_1901_4_91
Type: TC
Location: 125091 - 125849 (-)
Type: TC
Location: 125091 - 125849 (-)
Gene ID: HRGMv2_1901_4_92
Type: STP
Location: 125953 - 126936 (-)
Type: STP
Location: 125953 - 126936 (-)
Gene ID: HRGMv2_1901_4_93
Type: TF
Location: 126929 - 127606 (-)
Type: TF
Location: 126929 - 127606 (-)
Gene ID: HRGMv2_1901_4_94
Type: CAZyme
Location: 127872 - 134048 (-)
Type: CAZyme
Location: 127872 - 134048 (-)
Gene ID: HRGMv2_1901_4_95
Type: CAZyme
Location: 134839 - 136311 (-)
Type: CAZyme
Location: 134839 - 136311 (-)
Gene ID: HRGMv2_1901_4_96
Type: CAZyme
Location: 136312 - 137742 (-)
Type: CAZyme
Location: 136312 - 137742 (-)
Gene ID: HRGMv2_1901_4_97
Type: TC
Location: 137761 - 139047 (-)
Type: TC
Location: 137761 - 139047 (-)
Gene ID: HRGMv2_1901_4_98
Type: TC
Location: 139061 - 139360 (-)
Type: TC
Location: 139061 - 139360 (-)
Gene ID: HRGMv2_1901_4_99
Type: TC
Location: 139372 - 139686 (-)
Type: TC
Location: 139372 - 139686 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.