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Cluster: HRGMv2_1901_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1901_4 HRGMv2_1901_4_23 27886 28764 - 2.A.115.1.1
pfam HRGMv2_1901_4 HRGMv2_1901_4_24 28757 29872 - RF-1 | PCRF
TC HRGMv2_1901_4 HRGMv2_1901_4_25 29872 32520 - 3.A.5.1.3
TF HRGMv2_1901_4 HRGMv2_1901_4_26 32646 32843 - CSD
STP HRGMv2_1901_4 HRGMv2_1901_4_27 33022 33672 - Pribosyltran
TC HRGMv2_1901_4 HRGMv2_1901_4_28 33630 34772 - 3.A.11.1.2
CAZyme HRGMv2_1901_4 HRGMv2_1901_4_29 35066 37309 - GH3
TF HRGMv2_1901_4 HRGMv2_1901_4_30 37313 38122 - HTH_6
TC HRGMv2_1901_4 HRGMv2_1901_4_31 38198 39514 - 4.A.3.2.9
Gene ID: HRGMv2_1901_4_23
Type: TC
Location: 27886 - 28764 (-)
Gene ID: HRGMv2_1901_4_24
Type: pfam
Location: 28757 - 29872 (-)
Gene ID: HRGMv2_1901_4_25
Type: TC
Location: 29872 - 32520 (-)
Gene ID: HRGMv2_1901_4_26
Type: TF
Location: 32646 - 32843 (-)
Gene ID: HRGMv2_1901_4_27
Type: STP
Location: 33022 - 33672 (-)
Gene ID: HRGMv2_1901_4_28
Type: TC
Location: 33630 - 34772 (-)
Gene ID: HRGMv2_1901_4_29
Type: CAZyme
Location: 35066 - 37309 (-)
Gene ID: HRGMv2_1901_4_30
Type: TF
Location: 37313 - 38122 (-)
Gene ID: HRGMv2_1901_4_31
Type: TC
Location: 38198 - 39514 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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