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Cluster: HRGMv2_1901_CGC55

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1901_33 HRGMv2_1901_33_14 12613 13842 + CE1
TC HRGMv2_1901_33 HRGMv2_1901_33_15 13986 15353 - 2.A.66.1.13
pfam HRGMv2_1901_33 HRGMv2_1901_33_16 15356 16213 - Hydrolase_3
CAZyme HRGMv2_1901_33 HRGMv2_1901_33_17 16313 17761 - GH1
TC HRGMv2_1901_33 HRGMv2_1901_33_18 17761 19122 - 4.A.3.2.2
TC HRGMv2_1901_33 HRGMv2_1901_33_19 19135 19434 - 4.A.3.2.6
TC HRGMv2_1901_33 HRGMv2_1901_33_20 19441 19755 - 4.A.3.2.7
STP HRGMv2_1901_33 HRGMv2_1901_33_21 20070 22667 - AAA
STP HRGMv2_1901_33 HRGMv2_1901_33_22 22730 23317 - TetR_N
TC HRGMv2_1901_33 HRGMv2_1901_33_23 23470 24822 + 2.A.66.1.13
Gene ID: HRGMv2_1901_33_14
Type: CAZyme
Location: 12613 - 13842 (+)
Gene ID: HRGMv2_1901_33_15
Type: TC
Location: 13986 - 15353 (-)
Gene ID: HRGMv2_1901_33_16
Type: pfam
Location: 15356 - 16213 (-)
Gene ID: HRGMv2_1901_33_17
Type: CAZyme
Location: 16313 - 17761 (-)
Gene ID: HRGMv2_1901_33_18
Type: TC
Location: 17761 - 19122 (-)
Gene ID: HRGMv2_1901_33_19
Type: TC
Location: 19135 - 19434 (-)
Gene ID: HRGMv2_1901_33_20
Type: TC
Location: 19441 - 19755 (-)
Gene ID: HRGMv2_1901_33_21
Type: STP
Location: 20070 - 22667 (-)
Gene ID: HRGMv2_1901_33_22
Type: STP
Location: 22730 - 23317 (-)
Gene ID: HRGMv2_1901_33_23
Type: TC
Location: 23470 - 24822 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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