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Cluster: HRGMv2_1901_CGC53

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1901_32 HRGMv2_1901_32_32 27020 28417 - GH1
peptidase HRGMv2_1901_32 HRGMv2_1901_32_33 28411 29391 - S09.UPW
pfam HRGMv2_1901_32 HRGMv2_1901_32_34 29382 30443 - Lipase_GDSL | Lipase_GDSL_2
TC HRGMv2_1901_32 HRGMv2_1901_32_35 30487 31800 - 4.A.3.2.2
TF HRGMv2_1901_32 HRGMv2_1901_32_36 31951 33102 + HTH_AraC
pfam HRGMv2_1901_32 HRGMv2_1901_32_37 33308 34207 - ROK
CAZyme HRGMv2_1901_32 HRGMv2_1901_32_38 34204 35295 - GH170
Gene ID: HRGMv2_1901_32_32
Type: CAZyme
Location: 27020 - 28417 (-)
Gene ID: HRGMv2_1901_32_33
Type: peptidase
Location: 28411 - 29391 (-)
Gene ID: HRGMv2_1901_32_34
Type: pfam
Location: 29382 - 30443 (-)
Gene ID: HRGMv2_1901_32_35
Type: TC
Location: 30487 - 31800 (-)
Gene ID: HRGMv2_1901_32_36
Type: TF
Location: 31951 - 33102 (+)
Gene ID: HRGMv2_1901_32_37
Type: pfam
Location: 33308 - 34207 (-)
Gene ID: HRGMv2_1901_32_38
Type: CAZyme
Location: 34204 - 35295 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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