Cluster: HRGMv2_1901_CGC52
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1901
- CGC Family ID: CGCFAM_00092
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1901_30 | HRGMv2_1901_30_51 | 44693 | 46846 | - | GH112 |
| TC | HRGMv2_1901_30 | HRGMv2_1901_30_52 | 46850 | 47974 | - | 3.A.1.1.26 |
| pfam | HRGMv2_1901_30 | HRGMv2_1901_30_53 | 47986 | 48153 | - | DUF6903 |
| TC | HRGMv2_1901_30 | HRGMv2_1901_30_54 | 48166 | 49044 | - | 3.A.1.1.18 |
| TC | HRGMv2_1901_30 | HRGMv2_1901_30_55 | 49057 | 49953 | - | 3.A.1.1.21 |
Gene ID: HRGMv2_1901_30_51
Type: CAZyme
Location: 44693 - 46846 (-)
Type: CAZyme
Location: 44693 - 46846 (-)
Gene ID: HRGMv2_1901_30_52
Type: TC
Location: 46850 - 47974 (-)
Type: TC
Location: 46850 - 47974 (-)
Gene ID: HRGMv2_1901_30_53
Type: pfam
Location: 47986 - 48153 (-)
Type: pfam
Location: 47986 - 48153 (-)
Gene ID: HRGMv2_1901_30_54
Type: TC
Location: 48166 - 49044 (-)
Type: TC
Location: 48166 - 49044 (-)
Gene ID: HRGMv2_1901_30_55
Type: TC
Location: 49057 - 49953 (-)
Type: TC
Location: 49057 - 49953 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.