Cluster: HRGMv2_1901_CGC46
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1901
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1901_26 | HRGMv2_1901_26_3 | 1284 | 2606 | + | GH32 |
| pfam | HRGMv2_1901_26 | HRGMv2_1901_26_4 | 2731 | 3960 | + | MFS_3 | MFS_1 |
| TC | HRGMv2_1901_26 | HRGMv2_1901_26_5 | 4032 | 4724 | + | 3.A.1.128.3 |
| pfam | HRGMv2_1901_26 | HRGMv2_1901_26_6 | 4726 | 6288 | + | ABC_export |
| pfam | HRGMv2_1901_26 | HRGMv2_1901_26_7 | 6527 | 7288 | - | ABC2_membrane_2 |
| TC | HRGMv2_1901_26 | HRGMv2_1901_26_8 | 7285 | 8196 | - | 3.A.1.132.8 |
Gene ID: HRGMv2_1901_26_3
Type: CAZyme
Location: 1284 - 2606 (+)
Type: CAZyme
Location: 1284 - 2606 (+)
Gene ID: HRGMv2_1901_26_4
Type: pfam
Location: 2731 - 3960 (+)
Type: pfam
Location: 2731 - 3960 (+)
Gene ID: HRGMv2_1901_26_5
Type: TC
Location: 4032 - 4724 (+)
Type: TC
Location: 4032 - 4724 (+)
Gene ID: HRGMv2_1901_26_6
Type: pfam
Location: 4726 - 6288 (+)
Type: pfam
Location: 4726 - 6288 (+)
Gene ID: HRGMv2_1901_26_7
Type: pfam
Location: 6527 - 7288 (-)
Type: pfam
Location: 6527 - 7288 (-)
Gene ID: HRGMv2_1901_26_8
Type: TC
Location: 7285 - 8196 (-)
Type: TC
Location: 7285 - 8196 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.