Cluster: HRGMv2_1901_CGC44
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: host glycan/beta-glucan
- Genome ID: HRGMv2_1901
- CGC Family ID: CGCFAM_00020
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1901_23 | HRGMv2_1901_23_32 | 31806 | 32276 | + | 4.A.1.2.6 |
| pfam | HRGMv2_1901_23 | HRGMv2_1901_23_33 | 32413 | 33243 | + | PRD | PRD | CAT_RBD |
| pfam | HRGMv2_1901_23 | HRGMv2_1901_23_34 | 33336 | 34133 | + | YdjC |
| TC | HRGMv2_1901_23 | HRGMv2_1901_23_35 | 34130 | 35551 | + | 4.A.1.1.2 |
| CAZyme | HRGMv2_1901_23 | HRGMv2_1901_23_36 | 35562 | 36896 | + | GH4 |
Gene ID: HRGMv2_1901_23_32
Type: TC
Location: 31806 - 32276 (+)
Type: TC
Location: 31806 - 32276 (+)
Gene ID: HRGMv2_1901_23_33
Type: pfam
Location: 32413 - 33243 (+)
Type: pfam
Location: 32413 - 33243 (+)
Gene ID: HRGMv2_1901_23_34
Type: pfam
Location: 33336 - 34133 (+)
Type: pfam
Location: 33336 - 34133 (+)
Gene ID: HRGMv2_1901_23_35
Type: TC
Location: 34130 - 35551 (+)
Type: TC
Location: 34130 - 35551 (+)
Gene ID: HRGMv2_1901_23_36
Type: CAZyme
Location: 35562 - 36896 (+)
Type: CAZyme
Location: 35562 - 36896 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.